Hey everyone,
I am a bit confused. I called my INDELs pairwise using the SomaticIndelDetector. But in the resulting VCF the info field seems to be missing, is this normal? Or am I getting something wrong?
The output looks like this:
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ffpe
chr1 14947 . C CA . . . GT:AD:DP:MM:MQS:NQSBQ:NQSMM:REnd:RStart:SC 0/1:2,2:6:2.0,1.5:255.0,199.75:24.421053,31.571428:0.10526316,0.08571429:15,1:34,1:2,0,4,0
Sry for the poor format, here is also a hastebin version.
Could it be, that for pairwise callings scores are not possible?
With best,
Mario