Quantcast
Viewing all articles
Browse latest Browse all 3147

What Do You Expect As The False Positive And Negative Rate For Snp'S And Indels In Wgs?

What do you expect as the false positive and negative rate for SNP's and INDELS in a WGS experiment?

On which papers and data sets (inhouse or external) do you base this?

Edit: Of course this depends on a lot of thing as mentioned in the comment below. So let's assume a very vanilla situation: Human genome or popular model organism with a relative good assembly, relative close sample, maybe excluding difficult to sequence / map regions, Ilumina 100 x 100 reads, sequenced 30 x, mapped with BWA, SNP INDEL called with GATK.


Viewing all articles
Browse latest Browse all 3147

Trending Articles