Split Vcf File Into Snps And Indels

Hi there,

As recommended in the GATK best practices the Variant Quality Score Recalibration has to be done separately for SNPs and Indels. But, I didn't find the way to do this split in a clean way (for instance vcftools). Does anybody know a tool to do this?

I already found a script that does the trick but I am surprised that this functionality is not included in the usual tools for processing VCF files.

The script in case it helps: http://ngsda.blogspot.com.es/2011/06/awk-script-to-seperate-snp-and-indel.html

Thanks! Pablo.