Pindel Error: Shiftedvector Out-Of-Range Error

Hello,

I’ve been running pindel like so: pindel --config-file bam_config.txt --fasta /path/to/hg19/fasta/ --chromosome ALL --output-prefix /path/to/output

and I’ve noticed a lot of my pindel jobs fail with this error message: ShiftedVector out-of-range error: position 10096801 falls outside range 10099480-15100520

I’m using Pindel version 0.2.5, June 4 2013.

I was unable to find other posts relating to this error so any suggestions/help would be much appreciated. Thank you.